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SRX18350910: limb_blastema_18dpa_adult
1 ILLUMINA (Illumina HiSeq 2000) run: 1.1M spots, 49M bases, 50.3Mb downloads

Design: randomly captured using FACS
Submitted by: Karolinska Institute
Study: A small noncoding RNA links ribosome recovery and translation control to dedifferentiation during salamander limb regeneration
show Abstracthide Abstract
Building a blastema from the stump is a key step of salamander limb regeneration. Stump-derived cells temporarily suspend their identity as they contribute to the blastema by a process generally referred to as dedifferentiation. Here we provide evidence for a mechanism that involves an active inhibition of protein biosynthesis during blastema formation and growth. Relieving this inhibition results in higher number of cycling cells and enhances the pace of limb regeneration. By small RNA profiling and fate mapping of skeletal muscle progeny as a cellular model for dedifferentiation, we find that downregulation of miR-10b-5p is critical for rebooting the translation machinery. miR-10b-5p targets ribosomal mRNAs and its artificial upregulation causes decreased blastema cell proliferation, reduction in transcripts encoding ribosomal subunits, diminished nascent protein synthesis in muscle-derived limb progenitor cells, and retardation of limb regeneration. Taken together, our data identify a link between miRNA regulation, ribosome biogenesis and protein biosynthesis during newt limb regeneration.
Sample:
SAMN31838928 • SRS15838433 • All experiments • All runs
Library:
Name: blastema_P2_C24
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC SINGLE CELL
Selection: RT-PCR
Layout: SINGLE
Runs: 1 run, 1.1M spots, 49M bases, 50.3Mb
Run# of Spots# of BasesSizePublished
SRR223802931,138,60549M50.3Mb2022-11-22

ID:
25365129

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